That could literally be anything. Is there an amp with the head unit, or just head unit? Factory or replacement speakers? IIRC, the factory fronts are 2 Ohm, the rears 4 Ohm. My guess is either way you're looking at a rewire to get to the bottom of it. I can't imagine what you'd come up with trying to run an aftermarket head unit through the factory amps and speakers. I had my whole system rewired and though to most it sounds great, I'm still fiddling with it.
Apparently the factory came with a crossover between the front door and dash speakers, which crossover worked "well enough" with a 2 Ohm load. Now that everything is aftermarket (head unit, door and dash -- all 4 Ohm), a friend is custom fabricating a 4 Ohm crossover to run between the door and dash speakers. It's well within his area of expertise and well outside of mine...
So I've been a fair bit down this particular rabbit hole and am willing to help you through it. But it likely begins with rewiring that Alpine harness that's there. It's probably all wrong in ways you don't want to know, particularly if someone tried to "hunt and peck" to splice it into the factory setup and fader knob. My guys bypassed that knob on my instruction -- it was the only thing they came back to me and said "we don't know how to make this work, so what do you want to do?" And that was after removing the factory amps and what not -- I went with an aftermarket amp. My guess is trying to use an aftermarket head unit with the factory amps is all a fools errand -- endless hours and expertise, never a proper outcome.
Good luck.
maw